ProBiS H2O Plugin

We developed the ProBiS H2O approach, which enables identification of conserved water sites in proteins using experimental protein structures from the PDB or a set of custom protein structures available to the user. With a protein structure, a binding site or an individual water molecule as query.

ProBiS H2O Plugin (current version)


ProBiS H2O Plugin User Guide / Tutorial


Installation

Download the ProBiS H2O plugin file and follow the instructions in User Guide / Tutorial file.

System Requirements

The ProBiS plugin has been developed for Linux environment with PyMOL version > 1.8.

Important Notes

  • Before experimentation, database files need to be set-up, a process that can take a bit longer. Subsequent usage shoud be lightning-fast.
  • Sometimes the "fetch/reset" button downloads the system at PyMol defaut visualisation settings. This is a PyMol inconsistency that can be resolved by simply fetching the system again.

Related Publications


pdf Jukic,M., Ilas,J., Brvar,M., Kikelj,D., Cesar,J., Anderluh,M. Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B. European Journal of Medicinal Chemistry, 2017, 125, 500-514.
Jukic, Marko, et al. "Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B", uropean Journal of Medicinal Chemistry 125 (2017): 500-514.
Jukic, M., Ilas, J., Brvar, M., Kikelj, D., Cesar, J., Anderluh, M. (2016) Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B. European Journal of Medicinal Chemistry, 125, 500-514.
Jukic, Marko, et al. Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B. European Journal of Medicinal Chemistry, 2017, 125, 500-514.
@article{jukic2017linker,
 title={Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B},
 author={Jukic, Marko, Marko Jukic, Jukic and Anderluh},
 journal={European Journal of Medicinal Chemistry},
 volume={125},
 number={125},
 year={2017},
 publisher={Elsevier}
}
%0 Journal Article
%T Linker-switch approach towards new ATP binding site inhibitors of DNA gyrase B
%A Jukic, Marko
%A Ilas, Janez
%A Brvar, Matjaz
%A Kikelj, Danijel
%A Cesar, Jozko
%A Anderluh, Marko
%J European Journal of Medicinal Chemistry
%V 125
%N 125
%D 2017
%I Elsevier